Passenger mutations finder
Me-PaMuFind-It
Variations in strain BL6NJ
Crb1 |
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| Chromosome: | Chr 1 | |
| Position: | 139237086 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | CG | |
| Variation: | C | |
| BL6NJ: | aatgttgatttcacagtgtgtccctgaccatcccgagagacaggcacacCataagaactgtagctgtcttcacagtttcctccatgcaaacaggggct | View in UCSC |
Rxrg |
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| Chromosome: | Chr 1 | |
| Position: | 167598655 | |
| Alleles BL6NJ: | 1/2 | |
| Reference: | CGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA | |
| Variation: | CGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,CGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,CGA,C,CGAGAGAGAGAGAGAGAGA,CGAGAGAGAGAGAGAGA,CGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,CGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,CGAGAGAGAGAGAGA,CGAGAGAGAGAGA | |
| BL6NJ: | gccactcttgttagcccaagttgacggaagcccggctgtgcctgggagcCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAgagagagag | View in UCSC |
| gccactcttgttagcccaagttgacggaagcccggctgtgcctgggagcCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAgagagagag | View in UCSC | |
Cadm3 |
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| Chromosome: | Chr 1 | |
| Position: | 173349124 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | CT | |
| Variation: | C | |
| BL6NJ: | tccagtggagccggagttcccagctccaaatcctgctcctgccagtagcCgggggaaagaatctccatcaaggatgagccctgtgcaaactgctagtg | View in UCSC |
ENSMUSG00000063235 |
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| Chromosome: | Chr 2 | |
| Position: | 90917709 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | G | |
| Variation: | GA | |
| BL6NJ: | cgatgcggtggtaccagtcgcggtgcgccgggccgcgcaccctcccccgGAacactgtgtagagcagcgtcgggtagaagagcacccgggccaggccggc | View in UCSC |
Kif12 |
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| Chromosome: | Chr 4 | |
| Position: | 63171423 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | G | |
| Variation: | GGGGCCTCCACCCGGC | |
| BL6NJ: | cctgcgtgcgcgccccgtccagtacggcgccaaagcggaacgccacatcGGGGCCTCCACCCGGCgggctcaccttgagagaggatggagtaggggcgaggcaccatgtaggga | View in UCSC |
Otop1 |
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| Chromosome: | Chr 5 | |
| Position: | 38300289 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | TG | |
| Variation: | T | |
| BL6NJ: | gagcctgagggggtcccggaggatgtgcgcactctgcgtgtggtcaccgTctgcagcagcgaggctgccgcactggctgcatccactctcgggagcca | View in UCSC |
ENSMUSG00000038023 |
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| Chromosome: | Chr 5 | |
| Position: | 124624334 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | T | |
| Variation: | TAC | |
| BL6NJ: | tattaacagatgtttaatttgacattcctgcaggtgccgaagcccctgaTACaggtgccgacctgcccttgagcagcgtgaatggcgtgtgcccagaagtt | View in UCSC |
ENSMUSG00000029673 |
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| Chromosome: | Chr 5 | |
| Position: | 131476702 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | A | |
| Variation: | AG | |
| BL6NJ: | ggagcaggtggctgggggactggggccggggtggccgctgctgcacctgAGgcagcggggcaggctgcagctgggcttctgggggtccttgggctggctg | View in UCSC |
ENSMUSG00000038203 |
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| Chromosome: | Chr 6 | |
| Position: | 52260634 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | GC | |
| Variation: | G,GCCC | |
| BL6NJ: | gcggcagccgggtgggggaagcccccgcccccagctcccgccgccgccgCCGcggccgccgcccgtgccgccgccgccgccccttccatgttcttgttgag | View in UCSC |
ENSMUSG00000038203 |
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| Chromosome: | Chr 6 | |
| Position: | 52260635 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | C | |
| Variation: | CCG | |
| BL6NJ: | gcggcagccgggtgggggaagcccccgcccccagctcccgccgccgccgCCGcggccgccgcccgtgccgccgccgccgccccttccatgttcttgttgag | View in UCSC |
Sftpb |
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| Chromosome: | Chr 6 | |
| Position: | 72309802 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | TG | |
| Variation: | T | |
| BL6NJ: | cagggtgtgctggctgtggctgtgtcccaggtgtgccacgtggtaccccTggtggtgggtggcatctgccagtgcctggctgagcgctacacagttct | View in UCSC |
6330408A02Rik |
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| Chromosome: | Chr 7 | |
| Position: | 13260898 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | AG | |
| Variation: | A | |
| BL6NJ: | ttcctgggttcactctccaacaacactcggtcgccattaacaccctctgAggctgcctctccagttgcatctgcccattgcatggccactaggtcacg | View in UCSC |
Lig1 |
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| Chromosome: | Chr 7 | |
| Position: | 13305924 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | GC | |
| Variation: | G | |
| BL6NJ: | tttcctgagtgttgtctactttttttttctcatagtccctggttcgccaGcccctgtctcgacgccggcagctgctccgtgagaacttcgtggagaca | View in UCSC |
ENSMUSG00000054676 |
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| Chromosome: | Chr 7 | |
| Position: | 38194783 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | GC | |
| Variation: | G | |
| BL6NJ: | ggatgacgagtggacagttcaagcccgttcctcagatcttaatggagctGccccccgctgaacagcggaaacttgttaacgaagccatggccatcatc | View in UCSC |
Idh2 |
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| Chromosome: | Chr 7 | |
| Position: | 80098332 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | CCCAGGG | |
| Variation: | C | |
| BL6NJ: | agcgggcatagcatggcccccaggctgaaaactgccactctgccatggtCccagggccagggccagcagcacctccataagactcctggactc | View in UCSC |
Rsf1 |
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| Chromosome: | Chr 7 | |
| Position: | 97579905 | |
| Alleles BL6NJ: | 2/2 | |
| Reference: | TGGC | |
| Variation: | T,TGGCGACGGCGGC | |
| BL6NJ: | ctcctcccgcccccccatcccctcctcctccatcctccagttcaaaatgGCGAcggcggcggcggcggcggcggcggcggcagcggcagcggcgatggctcc | View in UCSC |
Rsf1 |
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| Chromosome: | Chr 7 | |
| Position: | 97579907 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | G | |
| Variation: | GCGA | |
| BL6NJ: | ctcctcccgcccccccatcccctcctcctccatcctccagttcaaaatgGCGAcggcggcggcggcggcggcggcggcggcagcggcagcggcgatggctcc | View in UCSC |
Kndc1 |
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| Chromosome: | Chr 7 | |
| Position: | 139923776 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | TC | |
| Variation: | T | |
| BL6NJ: | tcaaggcaaggagaagccagccacgacctggggcagcgggggaccctgcTcccccacagcactatcagatatagactccgacacgctctctcagggaa | View in UCSC |
ENSMUSG00000047935 |
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| Chromosome: | Chr 8 | |
| Position: | 12429967 | |
| Alleles BL6NJ: | 3/3 | |
| Reference: | CGGG | |
| Variation: | CG,C,CGG | |
| BL6NJ: | caacaactgggaatggaggacccctccagagacccagaagacccccgccCGGgggggggtgacatcagttggggagctattaataactgccctcccct | View in UCSC |
Pik3r2 |
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| Chromosome: | Chr 8 | |
| Position: | 70764763 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | TG | |
| Variation: | T | |
| BL6NJ: | cttacctccaccatgttcagtctacactccagctccccgtgctggcacgTgaactcccacgtaccgctgacatttctctcctgcaagatagcaatgga | View in UCSC |
Bean1 |
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| Chromosome: | Chr 8 | |
| Position: | 104182033 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | TC | |
| Variation: | T | |
| BL6NJ: | atcacctgcctctttgtgtctccacaggcgagtagaggggcctccccccTcaagaagtcagagctgtgctcgtgggcaggctggctccgctgttctgc | View in UCSC |
Mmp1a |
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| Chromosome: | Chr 9 | |
| Position: | 7465083 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | T | |
| Variation: | TG | |
| BL6NJ: | tggggtgcctgatgtggccccatatgccattactcacaacaatcctcgtTGgaccaaaacacatctgacatacaggtaactagaaggagagtcacaacgg | View in UCSC |
Olfr44 |
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| Chromosome: | Chr 9 | |
| Position: | 39484332 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | AT | |
| Variation: | A | |
| BL6NJ: | aaataatcttcatattatttctaactacataaatgtttttctttcaattAttttttcaaggcaacagcaacatctttattcctcagactgtagatcaa | View in UCSC |
Cilp |
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| Chromosome: | Chr 9 | |
| Position: | 65280130 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | TG | |
| Variation: | T | |
| BL6NJ: | atgaggcaacaacgggcaagcaggggtggcctacgccggcgtggaagcaTggcccctctgagattttctggtgttgctcaacaacctctgagcaacta | View in UCSC |
N4bp3 |
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| Chromosome: | Chr 11 | |
| Position: | 51651118 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | C | |
| Variation: | CG,CCTCG | |
| BL6NJ: | agcgcgcgccgcactgcttgctgctcctccttctcctcctcctccaactCGgggcctcgcccgcctcacccggtttccttccagaaccagcttccaaact | View in UCSC |
Nadk2 |
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| Chromosome: | Chr 15 | |
| Position: | 9100143 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | TG | |
| Variation: | T | |
| BL6NJ: | ttcattccctagggcttcctactatgaaatttcagtcgatgacggcccaTgggagaagcagaagagctcagggctcaatttgtgcactgggacaggat | View in UCSC |
Muc4 |
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| Chromosome: | Chr 16 | |
| Position: | 32753370 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | A | |
| Variation: | AC | |
| BL6NJ: | aaagcaagagtaccagcaccaatcctcaaactaccaccacccccagagtGGTAaccacatcaactccttcagcctcctcacgtgaccaaattcagacagaga | View in UCSC |
Muc4 |
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| Chromosome: | Chr 16 | |
| Position: | 32755179 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | G | |
| Variation: | GGTA | |
| BL6NJ: | aaagcaagagtaccagcaccaatcctcaaactaccaccacccccagagtGGTAaccacatcaactccttcagcctcctcacgtgaccaaattcagacagaga | View in UCSC |
ENSMUSG00000064043 |
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| Chromosome: | Chr 17 | |
| Position: | 47353916 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | AC | |
| Variation: | A | |
| BL6NJ: | gaagagttcaccatctcacagtaccaccagtggagagacggaccccaccAccatcttcccctgcaaggagtgtggcaagtaggtgcacttgagccagg | View in UCSC |
Tectb |
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| Chromosome: | Chr 19 | |
| Position: | 55192663 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | TC | |
| Variation: | T | |
| BL6NJ: | ggttgtggagttgtccctgaggagtaagctgattgcccaatatgtgtacTctgggctgtgtccacaggcaccacaggtttgagcattttgattgaatt | View in UCSC |
ENSMUSG00000079600 |
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| Chromosome: | Chr X | |
| Position: | 165003772 | |
| Alleles BL6NJ: | 4/4 | |
| Reference: | ATCTCTCTC | |
| Variation: | ATC,ATCTC,ATCTCTCTCTC,ATCTCTC,A | |
| BL6NJ: | tgtttctggctgctagcattgatactagcatatacttgaaaaatgtttaATCTCTCtctctctctctctctctctctctctctctctctctctctct | View in UCSC |
ENSMUSG00000054545 |
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| Chromosome: | Chr 1 | |
| Position: | 88215884 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | T | |
| Variation: | A | |
| BL6NJ: | caaagaacacaattcttgtcaaatggctaccccaaaatgatctgcttggAaggttgggggcatctgacatggaaaatcaaaccagggttaaattaaaaa | View in UCSC |
Mroh2a |
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| Chromosome: | Chr 1 | |
| Position: | 88234588 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | G | |
| Variation: | T | |
| BL6NJ: | ttctgagtgtaggcctggccccggctgatgcacactgaaatgaagcaaaTgtaccgggcattggcctttattgtaaaaataaggagcagaaatgaacag | View in UCSC |
Cd84 |
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| Chromosome: | Chr 1 | |
| Position: | 171839800 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | G | |
| Variation: | T | |
| BL6NJ: | aacacctttctggaccagctctggaccagaatctgatgttatgctctggTaaggggtcctctggatctagtttgcctctgggtctgacttcagatccat | View in UCSC |
2010315B03Rik |
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| Chromosome: | Chr 9 | |
| Position: | 124295159 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | T | |
| Variation: | C | |
| BL6NJ: | ctagaactttgaaattgttcttcaatataatggtcttcccaattgtagcCtaaaatgcagtaccagaaaatgtatatattattggaaattaaggaaatt | View in UCSC |
Vezf1 |
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| Chromosome: | Chr 11 | |
| Position: | 88068435 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | A | |
| Variation: | T | |
| BL6NJ: | tcggccgccgcagccatggaggccaactggaccgcgttcctgttccaggTtctgggggccccgggggggtcggggggccaggggggccgggccgggctc | View in UCSC |
Spata31 |
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| Chromosome: | Chr 13 | |
| Position: | 64921972 | |
| Alleles BL6NJ: | 1/1 | |
| Reference: | C | |
| Variation: | T | |
| BL6NJ: | gaacacaacctctcagactaggactatcttcaagaaagagatagagactTgagaagtcgttttactgcctagaaggacgagtgaccaaaatttggaggc | View in UCSC |
Number of variations: 37
Number of genes: 34